Selected Article

Title

Evolution of genes and genomes on the Drosophila phylogeny

Creator

Clark, Andrew GEisen, Michael BSmith, Douglas RBergman, Casey MOliver, BrianMarkow, Therese AKaufman, Thomas CKellis, ManolisGelbart, WilliamIyer, Venky NPollard, Daniel ASackton, Timothy BLarracuente, Amanda MSingh, Nadia DAbad, Jose PAbt, Dawn NAdryan, BorisAguade, MontserratAkashi, HiroshiAnderson, Wyatt WAquadro, Charles FArdell, David HArguello, RomanArtieri, Carlo GBarbash, Daniel ABarker, DanielBarsanti, PaoloBatterham, PhilBatzoglou, SerafimBegun, DaveBhutkar, ArjunBlanco, EnricoBosak, Stephanie ABradley, Robert KBrand, Adrianne DBrent, Michael RBrooks, Angela NBrown, Randall HButlin, Roger KCaggese, CorradoCalvi, Brian RBernardo de Carvalho, ACaspi, AnatCastrezana, SergioCelniker, Susan EChang, Jean LChapple, CharlesChatterji, SouravChinwalla, AsifCivetta, AlbertoClifton, Sandra WComeron, Josep MCostello, James CCoyne, Jerry ADaub, JenniferDavid, Robert GDelcher, Arthur LDelehaunty, KimDo, Chuong BEbling, HeatherEdwards, KevinEickbush, ThomasEvans, Jay DFilipski, AlanFindeiss, SvenFreyhult, EvaFulton, LucindaFulton, RobertGarcia, Ana C LGardiner, AnastasiaGarfield, David AGarvin, Barry EGibson, GregGilbert, DonGnerre, SanteGodfrey, JenniferGood, RobertGotea, ValerGravely, BrentonGreenberg, Anthony JGriffiths-Jones, SamGross, SamuelGuigo, RodericGustafson, Erik AHaerty, WilfriedHahn, Matthew WHalligan, Daniel LHalpern, Aaron LHalter, Gillian MHan, Mira VHeger, AndreasHillier, LaDeanaHinrichs, Angie SHolmes, IanHoskins, Roger AHubisz, Melissa JHultmark, DanHuntley, Melanie AJaffe, David BJagadeeshan, SantoshJeck, William RJohnson, JustinJones, Corbin DJordan, William CKarpen, Gary HKataoka, EikoKeightley, Peter DKheradpour, PouyaKirkness, Ewen FKoerich, Leonardo BKristiansen, KarstenKudrna, DaveKulathinal, Rob JKumar, SudhirKwok, RobertaLander, EricLangley, Charles HLapoint, RichardLazzaro, Brian PLee, So-JeongLevesque, LisaLi, RuiqiangLin, Chiao-FengLin, Michael FLindblad-Toh, KerstinLlopart, AnaLong, ManyuanLow, LloydLozovsky, ElenaLu, JianLuo, MeizhongMachado, Carlos AMakalowski, WojciechMarzo, MarMatsuda, MuneoMatzkin, LucianoMcAllister, BryantMcBride, Carolyn SMcKernan, BrendanMcKernan, KevinMendez-Lago, MariaMinx, PatrickMollenhauer, Michael UMontooth, KristiMount, Stephen MMu, XuMyers, EugeneNegre, BarbaraNewfeld, StuartNielsen, RasmusNoor, Mohamed A FO'Grady, PatrickPachter, LiorPapaceit, MontserratParisi, Matthew JParisi, MichaelParts, LeopoldPedersen, Jakob SPesole, GrazianoPhillippy, Adam MPonting, Chris PPop, MihaiPorcelli, DamianoPowell, Jeffrey RProhaska, SonjaPruitt, KimPuig, MartaQuesneville, HadiRam, Kristipati RaviRand, DavidRasmussen, Matthew DReed, Laura KReenan, RobertReily, AmyRemington, Karin ARieger, Tania TRitchie, Michael GRobin, CharlesRogers, Yu-HuiRohde, ClaudiaRozas, JulioRubenfield, Marc JRuiz, AlfredoRusso, SusanSalzberg, Steven LSanchez-Gracia, AlejandroSaranga, David JSato, HajimeSchaeffer, Stephen WSchatz, Michael CSchlenke, ToddSchwartz, RussellSegarra, CarmenSingh, Rama SSirot, LauraSirota, MarinaSisneros, Nicholas BSmith, Chris DSmith, Temple FSpieth, JohnStage, Deborah EStark, AlexanderStephan, WolfgangStrausberg, Robert LStrempel, SebastianSturgill, DavidSutton, GrangerSutton, Granger GTao, WeiTeichmann, SarahTobari, Yoshiko NTomimura, YoshihikoTsolas, Jason MValente, Vera L SVenter, EliVenter, J CraigVicario, SaverioVieira, Filipe GVilella, Albert JVillasante, AlfredoWalenz, BrianWang, JunWasserman, MarvinWatts, ThomasWilson, DerekWilson, Richard KWing, Rod AWolfner, Mariana FWong, AlexWong, Gane Ka-ShuWu, Chung-IWu, GabrielYamamoto, DaisukeYang, Hsiao-PeiYang, Shiaw-PyngYorke, James AYoshida, KiyohitoZdobnov, EvgenyZhang, PeiliZhang, YuZimin, Aleksey VBaldwin, JenniferAbdouelleil, AmrAbdulkadir, JamalAbebe, AdalAbera, BriktiAbreu, JustinAcer, St ChristopheAftuck, LynneAlexander, AllenAn, PeterAnderson, EricaAnderson, ScottArachi, HarindraAzer, MarcBachantsang, PasangBarry, AndrewBayul, TashiBerlin, AaronBessette, DanielBloom, TobyBlye, JasonBoguslavskiy, LeonidBonnet, ClaudeBoukhgalter, BorisBourzgui, ImaneBrown, AdamCahill, PatrickChanner, SheridonCheshatsang, YamaChuda, LisaCitroen, MiekeCollymore, AlvilleCooke, PatrickCostello, MauraD'Aco, KatieDaza, RizaDe Haan, GeorgiusDeGray, StuartDeMaso, ChristinaDhargay, NorbuDooley, KimberlyDooley, ErinDoricent, MissoleDorje, PassangDorjee, KunsangDupes, AlanElong, RichardFalk, JillFarina, AbderrahimFaro, SusanFerguson, DialloFisher, SheilaFoley, Chelsea DFranke, AliciaFriedrich, DennisGadbois, LorynGearin, GaryGearin, Christina RGiannoukos, GeorgiaGoode, TinaGraham, JosephGrandbois, EdwardGrewal, SharleenGyaltsen, KunsangHafez, NabilHagos, BirhaneHall, JenniferHenson, CharlotteHollinger, AndrewHonan, TraceyHuard, Monika DHughes, LeanneHurhula, BrianHusby, M EriiKamat, AshaKanga, BenKashin, SevaKhazanovich, DmitryKisner, PeterLance, KristaLara, MarciaLee, WilliamLennon, NiallLetendre, FrancesLeVine, RosieLipovsky, AlexLiu, XiaohongLiu, JinleiLiu, ShangtaoLokyitsang, TashiLokyitsang, YeshiLubonja, RakelaLui, AnnieMacDonald, PenMagnisalis, VasiliaMaru, KebedeMatthews, CharlesMcCusker, WilliamMcDonough, SusanMehta, TeenaMeldrim, JamesMeneus, LouisMihai, OanaMihalev, AtanasMihova, TanyaMittelman, RachelMlenga, ValentineMontmayeur, AnnaMulrain, LeonidasNavidi, AdamNaylor, JeromeNegash, TamratNguyen, ThuNguyen, NgaNicol, RobertNorbu, ChoeNorbu, NyimaNovod, NathanielO'Neill, BarryOsman, SahalMarkiewicz, EvaOyono, Otero LPatti, ChristopherPhunkhang, PemaPierre, FritzPriest, MargaretRaghuraman, SujaaRege, FilipReyes, RebeccaRise, CecilRogov, PeterRoss, KeenanRyan, ElizabethSettipalli, SampathShea, TerrySherpa, NgawangShi, LuShih, DianaSparrow, ToddSpaulding, JessicaStalker, JohnStange-Thomann, NicoleStavropoulos, SharonStone, CatherineStrader, ChristopherTesfaye, SenaitThomson, TaleneThoulutsang, YamaThoulutsang, DawaTopham, KerriTopping, IraTsamla, TsamlaVassiliev, HelenVo, AndyWangchuk, TseringWangdi, TseringWeiand, MichaelWilkinson, JaneWilson, AdamYadav, ShailendraYoung, GenevaYu, QingZembek, LisaZhong, DanniZimmer, AndrewZwirko, ZacJaffe, David BAlvarez, PabloBrockman, WillButler, JonathanChin, CheeWhyeGnerre, SanteGrabherr, ManfredKleber, MichaelMauceli, EvanMacCallum, Iain

Description

Udgivelsesdato: 2007-Nov-8

Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves the precision and sensitivity of evolutionary inference, producing more robust results than single-genome analyses can provide. The genomes of 12 Drosophila species, ten of which are presented here for the first time (sechellia, simulans, yakuba, erecta, ananassae, persimilis, willistoni, mojavensis, virilis and grimshawi), illustrate how rates and patterns of sequence divergence across taxa can illuminate evolutionary processes on a genomic scale. These genome sequences augment the formidable genetic tools that have made Drosophila melanogaster a pre-eminent model for animal genetics, and will further catalyse fundamental research on mechanisms of development, cell biology, genetics, disease, neurobiology, behaviour, physiology and evolution. Despite remarkable similarities among these Drosophila species, we identified many putatively non-neutral changes in protein-coding genes, non-coding RNA genes, and cis-regulatory regions. These may prove to underlie differences in the ecology and behaviour of these diverse species.

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eng

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article

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Clark , A G , Eisen , M B , Smith , D R , Bergman , C M , Oliver , B , Markow , T A , Kaufman , T C , Kellis , M , Gelbart , W , Iyer , V N , Pollard , D A , Sackton , T B , Larracuente , A M , Singh , N D , Abad , J P , Abt , D N , Adryan , B , Aguade , M , Akashi , H , Anderson , W W , Aquadro , C F , Ardell , D H , Arguello , R , Artieri , C G , Barbash , D A , Barker , D , Barsanti , P , Batterham , P , Batzoglou , S , Begun , D , Bhutkar , A , Blanco , E , Bosak , S A , Bradley , R K , Brand , A D , Brent , M R , Brooks , A N , Brown , R H , Butlin , R K , Caggese , C , Calvi , B R , Bernardo de Carvalho , A , Caspi , A , Castrezana , S , Celniker , S E , Chang , J L , Chapple , C , Chatterji , S , Chinwalla , A , Civetta , A , Clifton , S W , Comeron , J M , Costello , J C , Coyne , J A , Daub , J , David , R G , Delcher , A L , Delehaunty , K , Do , C B , Ebling , H , Edwards , K , Eickbush , T , Evans , J D , Filipski , A , Findeiss , S , Freyhult , E , Fulton , L , Fulton , R , Garcia , A C L , Gardiner , A , Garfield , D A , Garvin , B E , Gibson , G , Gilbert , D , Gnerre , S , Godfrey , J , Good , R , Gotea , V , Gravely , B , Greenberg , A J , Griffiths-Jones , S , Gross , S , Guigo , R , Gustafson , E A , Haerty , W , Hahn , M W , Halligan , D L , Halpern , A L , Halter , G M , Han , M V , Heger , A , Hillier , L , Hinrichs , A S , Holmes , I , Hoskins , R A , Hubisz , M J , Hultmark , D , Huntley , M A , Jaffe , D B , Jagadeeshan , S , Jeck , W R , Johnson , J , Jones , C D , Jordan , W C , Karpen , G H , Kataoka , E , Keightley , P D , Kheradpour , P , Kirkness , E F , Koerich , L B , Kristiansen , K , Kudrna , D , Kulathinal , R J , Kumar , S , Kwok , R , Lander , E , Langley , C H , Lapoint , R , Lazzaro , B P , Lee , S-J , Levesque , L , Li , R , Lin , C-F , Lin , M F , Lindblad-Toh , K , Llopart , A , Long , M , Low , L , Lozovsky , E , Lu , J , Luo , M , Machado , C A , Makalowski , W , Marzo , M , Matsuda , M , Matzkin , L , McAllister , B , McBride , C S , McKernan , B , McKernan , K , Mendez-Lago , M , Minx , P , Mollenhauer , M U , Montooth , K , Mount , S M , Mu , X , Myers , E , Negre , B , Newfeld , S , Nielsen , R , Noor , M A F , O'Grady , P , Pachter , L , Papaceit , M , Parisi , M J , Parisi , M , Parts , L , Pedersen , J S , Pesole , G , Phillippy , A M , Ponting , C P , Pop , M , Porcelli , D , Powell , J R , Prohaska , S , Pruitt , K , Puig , M , Quesneville , H , Ram , K R , Rand , D , Rasmussen , M D , Reed , L K , Reenan , R , Reily , A , Remington , K A , Rieger , T T , Ritchie , M G , Robin , C , Rogers , Y-H , Rohde , C , Rozas , J , Rubenfield , M J , Ruiz , A , Russo , S , Salzberg , S L , Sanchez-Gracia , A , Saranga , D J , Sato , H , Schaeffer , S W , Schatz , M C , Schlenke , T , Schwartz , R , Segarra , C , Singh , R S , Sirot , L , Sirota , M , Sisneros , N B , Smith , C D , Smith , T F , Spieth , J , Stage , D E , Stark , A , Stephan , W , Strausberg , R L , Strempel , S , Sturgill , D , Sutton 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